The fuel filter will cause no problems. I bought my 1993 Suzuki LTF-4wd new and the dealer had installed one. I didn't even know it was there until it plugged up and needed replacing 19 years later.
This is the one I bought, it is identical to the one it replaced, sorry I was wrong on the price, they are $4.75 :
1/4" Fuel Filter Visu Filter Made in the USA CR 125 250 ATV GO Kart Motorcycle | eBay
Just cut the line on top where it passes under the seat and plug it in. No clamps needed because the pressure is so low. Note the directional arrow on the filter.